223 lines
7.2 KiB
VB.net
223 lines
7.2 KiB
VB.net
#Region "Microsoft.VisualBasic::393a9b9ba0b87a8630ae8da716c12572, R#\Runtime\System\Rscript.vb"
|
|
|
|
' Author:
|
|
'
|
|
' asuka (amethyst.asuka@gcmodeller.org)
|
|
' xie (genetics@smrucc.org)
|
|
' xieguigang (xie.guigang@live.com)
|
|
'
|
|
' Copyright (c) 2018 GPL3 Licensed
|
|
'
|
|
'
|
|
' GNU GENERAL PUBLIC LICENSE (GPL3)
|
|
'
|
|
'
|
|
' This program is free software: you can redistribute it and/or modify
|
|
' it under the terms of the GNU General Public License as published by
|
|
' the Free Software Foundation, either version 3 of the License, or
|
|
' (at your option) any later version.
|
|
'
|
|
' This program is distributed in the hope that it will be useful,
|
|
' but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
' MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
' GNU General Public License for more details.
|
|
'
|
|
' You should have received a copy of the GNU General Public License
|
|
' along with this program. If not, see <http://www.gnu.org/licenses/>.
|
|
|
|
|
|
|
|
' /********************************************************************************/
|
|
|
|
' Summaries:
|
|
|
|
|
|
' Code Statistics:
|
|
|
|
' Total Lines: 164
|
|
' Code Lines: 102 (62.20%)
|
|
' Comment Lines: 41 (25.00%)
|
|
' - Xml Docs: 82.93%
|
|
'
|
|
' Blank Lines: 21 (12.80%)
|
|
' File Size: 5.66 KB
|
|
|
|
|
|
' Class Rscript
|
|
'
|
|
' Properties: fileName, script, source
|
|
'
|
|
' Constructor: (+1 Overloads) Sub New
|
|
' Function: AutoHandleScript, FromFile, FromText, GetByLineNumber, GetByLineRange
|
|
' GetFileNameDisplay, (+2 Overloads) GetRawText, GetSourceDirectory, (+2 Overloads) GetTokens, ToString
|
|
'
|
|
'
|
|
' /********************************************************************************/
|
|
|
|
#End Region
|
|
|
|
Imports System.Runtime.CompilerServices
|
|
Imports Microsoft.VisualBasic.ApplicationServices
|
|
Imports Microsoft.VisualBasic.ComponentModel.Ranges.Model
|
|
Imports Microsoft.VisualBasic.Text
|
|
Imports SMRUCC.Rsharp.Language.TokenIcer
|
|
|
|
Namespace Runtime.Components
|
|
|
|
''' <summary>
|
|
''' An Rscript source wrapper
|
|
''' </summary>
|
|
Public Class Rscript
|
|
|
|
''' <summary>
|
|
''' If the script is load from a text file, then property value of <see cref="source"/> is the file location
|
|
''' Otherwise this property is value nothing
|
|
''' </summary>
|
|
''' <returns></returns>
|
|
Public Property source As String
|
|
|
|
''' <summary>
|
|
''' The script text
|
|
''' </summary>
|
|
''' <returns></returns>
|
|
Public Property script As String
|
|
|
|
Public ReadOnly Property fileName As String
|
|
Get
|
|
If source.StringEmpty Then
|
|
Return $"<in_memory_&{script.GetHashCode.ToHexString}>"
|
|
Else
|
|
Return source.FileName
|
|
End If
|
|
End Get
|
|
End Property
|
|
|
|
<DebuggerStepThrough>
|
|
Private Sub New()
|
|
End Sub
|
|
|
|
<MethodImpl(MethodImplOptions.AggressiveInlining)>
|
|
Public Function GetByLineNumber(line As Integer) As String
|
|
Return script.LineTokens.Skip(line - 1).FirstOrDefault
|
|
End Function
|
|
|
|
''' <summary>
|
|
''' Get language <see cref="Scanner"/> tokens
|
|
''' </summary>
|
|
''' <returns></returns>
|
|
'''
|
|
<DebuggerStepThrough>
|
|
Public Function GetTokens() As Token()
|
|
Return New Scanner(script).GetTokens.ToArray
|
|
End Function
|
|
|
|
Public Function GetSourceDirectory() As String
|
|
If source.StringEmpty Then
|
|
Return App.CurrentDirectory
|
|
Else
|
|
Return source.ParentPath
|
|
End If
|
|
End Function
|
|
|
|
Public Shared Function GetTokens(text As String) As Token()
|
|
Return FromText(text).GetTokens
|
|
End Function
|
|
|
|
''' <summary>
|
|
''' R script from local file
|
|
''' </summary>
|
|
''' <param name="path"></param>
|
|
''' <returns></returns>
|
|
<DebuggerStepThrough>
|
|
Public Shared Function FromFile(path As String) As Rscript
|
|
Return New Rscript With {
|
|
.source = path.GetFullPath,
|
|
.script = .source.ReadAllText
|
|
}
|
|
End Function
|
|
|
|
Public Shared Function GetFileNameDisplay(handle As String) As String
|
|
If Not handle.FileExists Then
|
|
Return $"<in_memory_&{handle.GetHashCode.ToHexString}>"
|
|
Else
|
|
Return handle.FileName
|
|
End If
|
|
End Function
|
|
|
|
''' <summary>
|
|
''' auto handle Rscript text from:
|
|
'''
|
|
''' + plain text input
|
|
''' + local file
|
|
''' + network file on a web server
|
|
'''
|
|
''' </summary>
|
|
''' <param name="handle"></param>
|
|
''' <returns></returns>
|
|
Public Shared Function AutoHandleScript(handle As String) As Rscript
|
|
If handle.FileExists Then
|
|
Return FromFile(handle)
|
|
ElseIf handle.IsURLPattern Then
|
|
' download to a temp location
|
|
' and then create Rscript object from the temp file
|
|
Dim tmpfile As String = TempFileSystem.GetAppSysTempFile("", sessionID:=App.PID.ToHexString, prefix:=handle.BaseName) & "/" & handle.FileName
|
|
Dim Rscript As Rscript
|
|
|
|
' download script file in silent
|
|
handle.GET(echo:=False).SaveTo(tmpfile)
|
|
Rscript = FromFile(tmpfile)
|
|
|
|
Return Rscript
|
|
Else
|
|
Return FromText(handle)
|
|
End If
|
|
End Function
|
|
|
|
''' <summary>
|
|
''' R script from in memory plain text input
|
|
''' </summary>
|
|
''' <param name="text"></param>
|
|
''' <returns></returns>
|
|
'''
|
|
<MethodImpl(MethodImplOptions.AggressiveInlining)>
|
|
<DebuggerStepThrough>
|
|
Public Shared Function FromText(text As String) As Rscript
|
|
Return New Rscript With {
|
|
.source = Nothing,
|
|
.script = text
|
|
}
|
|
End Function
|
|
|
|
Public Function GetRawText(tokenSpan As IEnumerable(Of Token)) As String
|
|
With tokenSpan.OrderBy(Function(t) t.span.start).ToArray
|
|
Dim left = .First.span.start
|
|
Dim right = .Last.span.stops
|
|
|
|
Return script.Substring(left, right - left)
|
|
End With
|
|
End Function
|
|
|
|
<MethodImpl(MethodImplOptions.AggressiveInlining)>
|
|
Public Function GetRawText(span As IntRange) As String
|
|
Return script.Substring(span.Min, span.Interval)
|
|
End Function
|
|
|
|
Public Overrides Function ToString() As String
|
|
If source.StringEmpty Then
|
|
Return "<in_memory> " & script
|
|
Else
|
|
Return $"<{source.FileName}> " & script.LineTokens.First & "..."
|
|
End If
|
|
End Function
|
|
|
|
<MethodImpl(MethodImplOptions.AggressiveInlining)>
|
|
Public Function GetByLineRange(region As IntRange) As String
|
|
Return script _
|
|
.LineTokens _
|
|
.Skip(region.Min - 1) _
|
|
.Take(region.Interval) _
|
|
.JoinBy(ASCII.LF)
|
|
End Function
|
|
End Class
|
|
End Namespace
|